Synthetic biology of plant signaling circuits

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Žádníková P*, Wabnik K*, Abuzeineh A, Gallemi M, Van Der Straeten D, Smith RS, Inzé S, Friml J , Prusinkiewicz P and Benková EA model of differential growth-guided apical hook formation in plants, 2016 , The Plant Cell, Oct;28(10):2464-2477. *co-first

 

Łangowski L, Wabnik K, Li H, Vanneste S, Naramoto S, Tanaka H and Friml J. Cellular Mechanisms for Cargo Delivery and Polarity Maintenance at Different Polar Domains in Plant Cells. Cell Discovery 2, Article number: 16018 (2016).

 

Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik K, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nat Commun. 2015; 6:8821.

 

Šimášková M, O'Brien JA, Khan M, Van Noorden G, Ötvös K, Vieten A, De Clercq I, Van Haperen JM, Cuesta C, Hoyerová K, Vanneste S, Marhavý P, Wabnik K, Van Breusegem F, Nowack M, Murphy A, Friml J, Weijers D, Beeckman T, Benková E. Cytokinin response factors regulate PIN-FORMED auxin transporters. Nat Commun. 2015; 6:8717.

 

Cuesta C, Wabnik K, Benková E. Systems approaches to study root architecture dynamics. Front Plant Sci. 2013; 4:537

 

Wabnik K, Robert HS, Smith RS, Friml J. Modeling framework for the establishment of the apical-basal embryonic axis in plants. Curr Biology 2013 Dec 16; 23(24):2513-8. PMID: 24291090. In press coverage  

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Tian H*, Wabnik K*, Niu T, Li H, Yu Q, Pollmann S, Vanneste S, Govaerts W, Rolčík J, Geisler M, Friml J, and Ding Z (2014) WOX5 and IAA17-dependent feedback circuit regulates auxin-driven patterning of the Arabidopsis root tip, Molecular Plant 7(2):277-89 *co-first

 

Kleine-Vehn J*, Wabnik K*, Martiniere A, Langowski L, Willig K, Naramoto S, Leitner J, Tanaka H, Jakobs S, Robert S, Luschnig C, Govaerts W, S WH, Runions J, Friml J (2011) Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane. Mol Syst Biol 7:540, (Featured Article)

 

Wabnik K*, Kleine-Vehn J*, Govaerts W, Friml J (2011) Prototype cell-to-cell auxin transport mechanism by intracellular auxin compartmentalization. Trends Plant Sci 16: 468-475, (Editorial Choice) *equal contribution

 

Wabnik K, Govaerts W, Friml J, Kleine-Vehn J (2011) Feedback models for polarized auxin transport: an emerging trend. Mol Biosyst 7: 2352-2359

 

Wabnik K*, Kleine-Vehn J*, Balla J, Sauer M, Naramoto S, Reinohl V, Merks RM, Govaerts W, Friml J (2010) Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. Mol Syst Biol 6: 447,*equal contribution

 

Wabnik K, Hvidsten TR, Kedzierska A, Van Leene J, De Jaeger G, Beemster GT, Komorowski J, Kuiper MT (2009) Gene expression trends and protein features effectively complement each other in gene function prediction. Bioinformatics 25: 322-330

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